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Source database (GenBank or RefSeq) File type

Criollo_cocoa_genome_V2

Organism name:

Theobroma cacao (cacao)

Infraspecific name:

Cultivar: B97-61/B2

BioSample:

SAMEA4028428

BioProject:

PRJEB14326

Submitter:

CIRAD

Date:

2016/07/09

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000208745.2 (latest)

RefSeq assembly accession:

GCF_000208745.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

FLSQ01

IDs: 787341 [UID] 3420798 [GenBank] 3431268 [RefSeq]

See Genome Information for Theobroma cacao

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000208745.2	≠	GCF_000208745.1	Criollo_cocoa_genome_V2	Chromosome	Latest GenBank, Latest RefSeq
GCA_000208745.1	n/a	n/a	ASM20874v1	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	324,879,930
Total ungapped length	306,380,296
Gaps between scaffolds	0
Number of scaffolds	431
Scaffold N50	36,364,294
Scaffold L50	5
Number of contigs	7,743
Contig N50	87,439
Contig L50	879
Total number of chromosomes and plasmids	11
Number of component sequences (WGS or clone)	431

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	LT594788.1	=	NC_030850.1	0
Chromosome 2	LT594789.1	=	NC_030851.1	0
Chromosome 3	LT594790.1	=	NC_030852.1	0
Chromosome 4	LT594791.1	=	NC_030853.1	0
Chromosome 5	LT594792.1	=	NC_030854.1	0
Chromosome 6	LT594793.1	=	NC_030855.1	0
Chromosome 7	LT594794.1	=	NC_030856.1	0
Chromosome 8	LT594795.1	=	NC_030857.1	0
Chromosome 9	LT594796.1	=	NC_030858.1	0
Chromosome 10	LT594797.1	=	NC_030859.1	0
unplaced	n/a	n/a	n/a	420

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	324,719,311	430	306,219,677	36,364,294	7,312
Chromosome 1	37,323,695	1	35,953,435	37,323,695	685
Chromosome 2	41,236,440	1	39,206,592	41,236,440	887
Chromosome 3	36,364,294	1	34,196,393	36,364,294	865
Chromosome 4	31,929,104	1	30,495,011	31,929,104	628
Chromosome 5	39,371,879	1	37,144,644	39,371,879	927
Chromosome 6	26,303,135	1	24,334,808	26,303,135	594
Chromosome 7	21,614,486	1	20,520,938	21,614,486	505
Chromosome 8	19,593,398	1	18,370,937	19,593,398	404
Chromosome 9	38,630,433	1	36,332,680	38,630,433	742
Chromosome 10	21,822,658	1	20,755,179	21,822,658	507
unplaced	10,529,789	420	8,909,060	54,306	568

Assembly

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Criollo_cocoa_genome_V2

See Genome Information for Theobroma cacao

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear