Jonathan Lynch, Ph.D.

Jonathan Lynch, Ph.D.

  • University Distinguished Professor
221 Tyson Bldg.
University Park, PA 16802

Areas of Expertise

  • crop ecophysiology
  • plant adaptation to abiotic stress
  • plant genetics
  • simulation modeling

Websites

Education

  • 1987 Ph.D. University of California, Davis (Plant Physiology)
  • 1982 M.Sc. University of California, Davis (Plant Physiology)
  • 1980 B.Sc. University of California, Berkeley (Soils and Plant Nutrition)

Research Interests

My research focuses on understanding the basis of plant adaptation to drought and low soil fertility. This encompasses physiology, genetics, and ecology, centered on organismic processes. Our current work focuses on understanding root phenes that can be used to breed crops with better acquisition of water, nitrogen, and phosphorus. For a more detailed description of my interests, please see the overview given on the root lab page. 

Appointments

2016-             Advisory Council, Foundation for Food and Agriculture Research

2015-             Chair in Root Biology, University of Nottingham, UK   

2013-             Director, Feed the Future Innovation Lab for Climate Resilient Beans

2012-2015      Guest Researcher, Forshungszentrum Jülich, Germany

1991-              Asst./Assoc./ Full Professor, Penn State University

1988-1991       Senior Staff, CIAT, Colombia

1984-1987       Postgraduate Researcher, University of California, Davis

Honors and Awards

Dennis Hoagland Award, American Society of Plant Biologists, 2018

Woolhouse Lecturer, Society for Experimental Biology, 2017

Dundee Medal, 2015

Alex and Jessie C. Black Award for Excellence in Agricultural Research, 2005

Howard P Taylor lectureship in root biology research, 2005

Fellow, Crop Science Society of America, 2004

China Friendship Award, the highest recognition awarded foreigners by the government of China, received from Premier Zhu Rongji, Beijing 1999.

Excellent Educational Work Prize, Guangdong Province, China, 1996

Distinguished Professor, Mexican Academy of Sciences, 2005

Nonresident Fellow, Samuel Roberts Noble Foundation

Publications

Foliar elemental microprobe data and leaf anatomical traits consistent with drought tolerance in Eucalyptus largiflorens (Myrtaceae)
Australian Journal of Botany, Fernando, Denise R., Lynch, Jonathan P., Hanlon, Meredith T., Marshall, Alan T., 2021

The ability of maize roots to grow through compacted soil is not dependent on the amount of roots formed
Field Crops Research, Vanhees, Dorien J., Loades, Kenneth W., Bengough, A. Glyn, Mooney, Sacha J., Lynch, Jonathan P., 2021

Utility of Climatic Information via Combining Ability Models to Improve Genomic Prediction for Yield Within the Genomes to Fields Maize Project
Frontiers in Genetics, Jarquin, Diego, de Leon, Natalia, Romay, Cinta, Bohn, Martin, Buckler, Edward S., Ciampitti, Ignacio, Edwards, Jode, Ertl, David, Flint-Garcia, Sherry, Gore, Michael A., Graham, Christopher, Hirsch, Candice N., Holland, James B., Hooker, David, Kaeppler, Shawn M., Knoll, Joseph, Lee, Elizabeth C., Lawrence-Dill, Carolyn J., Lynch, Jonathan P., Moose, Stephen P., Murray, Seth C., Nelson, Rebecca, Rocheford, Torbert, Schnable, James C., Schnable, Patrick S., Smith, Margaret, Springer, Nathan, Thomison, Peter, Tuinstra, Mitch, Wisser, Randall J., Xu, Wenwei, Yu, Jianming, Lorenz, Aaron, 2021

Nodal root diameter and node number in maize (Zea mays L.) interact to influence plant growth under nitrogen stress
Plant Direct, Schneider, Hannah M., Yang, Jennifer T., Brown, Kathleen M., Lynch, Jonathan P., 2021

Multiseriate cortical sclerenchyma enhance root penetration in compacted soils
Proceedings of the National Academy of Sciences of the United States of America, Schneider, Hannah M., Strock, Christopher F., Hanlon, Meredith T., Vanhees, Dorien J., Perkins, Alden C., Ajmera, Ishan B., Sidhu, Jagdeep Singh, Mooney, Sacha J., Brown, Kathleen M., Lynch, Jonathan P., 2021

Three-dimensional imaging reveals that positions of cyst nematode feeding sites relative to xylem vessels differ between susceptible and resistant wheat
Plant Cell Reports, Levin, Kara A., Tucker, Matthew R., Strock, Christopher F., Lynch, Jonathan P., Mather, Diane E., 2021

The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment
G3: Genes, Genomes, Genetics, Rogers, Anna R., Dunne, Jeffrey C., Romay, Cinta, Bohn, Martin, Buckler, Edward S., Ciampitti, Ignacio A., Edwards, Jode, Ertl, David, Flint-Garcia, Sherry, Gore, Michael A., Graham, Christopher, Hirsch, Candice N., Hood, Elizabeth, Hooker, David C., Knoll, Joseph, Lee, Elizabeth C., Lorenz, Aaron, Lynch, Jonathan P., McKay, John, Moose, Stephen P., Murray, Seth C., Nelson, Rebecca, Rocheford, Torbert, Schnable, James C., Schnable, Patrick S., Sekhon, Rajandeep, Singh, Maninder, Smith, Margaret, Springer, Nathan, Thelen, Kurt, Thomison, Peter, Thompson, Addie, Tuinstra, Mitch, Wallace, Jason, Wisser, Randall J., Xu, Wenwei, Gilmour, A. R., Kaeppler, Shawn M., De Leon, Natalia, Holland, James B., 2021

Plant roots sense soil compaction through restricted ethylene diffusion
Science, Pandey, Bipin K., Huang, Guoqiang, Bhosale, Rahul, Hartman, Sjon, Sturrock, Craig J., Jose, Lottie, Martin, Olivier C., Karady, Michal, Voesenek, Laurentius A.C.J., Ljung, Karin, Lynch, Jonathan P., Brown, Kathleen M., Whalley, William R., Mooney, Sacha J., Zhang, Dabing, Bennett, Malcolm J., 2021

Genetic control of root architectural traits in KDML105 chromosome segment substitution lines under well-watered and drought stress conditions
Plant Production Science, Ruangsiri, Mathurada, Vejchasarn, Phanchita, Saengwilai, Patompong, Lynch, Jonathan, Bennett, Malcolm J., Brown, Kathleen M., Chutteang, Cattleya, Boonruangrod, Ratri, Shearman, Jeremy, Toojinda, Theerayut, Siangliw, Jonaliza L., 2021

Silencing the alarm: an insect salivary enzyme closes plant stomata and inhibits volatile release
New Phytologist, Lin, Po An, Chen, Yintong, Chaverra-Rodriguez, Duverney, Heu, Chan Chin, Zainuddin, Nursyafiqi Bin, Sidhu, Jagdeep Singh, Peiffer, Michelle, Tan, Ching Wen, Helms, Anjel, Kim, Donghun, Ali, Jared, Rasgon, Jason L., Lynch, Jonathan, Anderson, Charles T., Felton, Gary W., 2021

A comparative analysis of quantitative metrics of root architecture
Plant Phenomics, Rangarajan, Harini, Lynch, Jonathan P., 2021

Root anatomy and soil resource capture
Plant and Soil, Lynch, Jonathan P., Strock, Christopher F., Schneider, Hannah M., Sidhu, Jagdeep Singh, Ajmera, Ishan, Galindo-Castañeda, Tania, Klein, Stephanie P., Hanlon, Meredith T., 2021

Root phenotypic diversity in common bean reveals contrasting strategies for soil resource acquisition among gene pools and races
Crop Science, Jochua, Celestina N., Strock, Christopher F., Lynch, Jonathan P., 2020

Comparative phenomics of annual grain legume root architecture
Crop Science, Burridge, James D., Rangarajan, Harini, Lynch, Jonathan P., 2020

Spatio-temporal variation in water uptake in seminal and nodal root systems of barley plants grown in soil
Frontiers in Plant Science, Schneider, Hannah M., Postma, Johannes A., Kochs, Johannes, Pflugfelder, Daniel, Lynch, Jonathan P., van Dusschoten, Dagmar, 2020

Root secondary growth
Annals of Botany, Strock, Christopher F., Lynch, Jonathan P., 2020

Root anatomical traits contribute to deeper rooting of maize under compacted field conditions
Journal of Experimental Botany, Vanhees, Dorien J., Loades, Kenneth W., Glyn Bengough, A., Mooney, Sacha J., Lynch, Jonathan P., 2020

Multiscale computational models can guide experimentation and targeted measurements for crop improvement
Plant Journal, Benes, Bedrich, Guan, Kaiyu, Lang, Meagan, Long, Stephen P., Lynch, Jonathan P., Marshall-Colón, Amy, Peng, Bin, Schnable, James, Sweetlove, Lee J., Turk, Matthew J., 2020

Multiple integrated root phenotypes are associated with improved drought tolerance
Plant Physiology, Klein, Stephanie P., Schneider, Hannah M., Perkins, Alden C., Brown, Kathleen M., Lynch, Jonathan P., 2020

Genetic control of root architectural plasticity in maize
Journal of Experimental Botany, Schneider, Hannah M., Klein, Stephanie P., Hanlon, Meredith T., Nord, Eric A., Kaeppler, Shawn, Brown, Kathleen M., Warry, Andrew, Bhosale, Rahul, Lynch, Jonathan P., Dodd, Ian, 2020

Should Root Plasticity Be a Crop Breeding Target?
Frontiers in Plant Science, Schneider, Hannah M., Lynch, Jonathan P., 2020

Genetic components of root architecture and anatomy adjustments to water-deficit stress in spring barley
Plant, Cell and Environment, Oyiga, Benedict C., Palczak, Janina, Wojciechowski, Tobias, Lynch, Jonathan P., Naz, Ali A., Léon, Jens, Ballvora, Agim, 2020

Genetic control of root anatomical plasticity in maize
Plant Genome, Schneider, Hannah M., Klein, Stephanie P., Hanlon, Meredith T., Kaeppler, Shawn, Brown, Kathleen M., Lynch, Jonathan P., 2020

Maize genomes to fields (G2F)
BMC Research Notes, McFarland, Bridget A., Alkhalifah, Naser, Bohn, Martin, Bubert, Jessica, Buckler, Edward S., Ciampitti, Ignacio, Edwards, Jode, Ertl, David, Gage, Joseph L., Falcon, Celeste M., Flint-Garcia, Sherry, Gore, Michael A., Graham, Christopher, Hirsch, Candice N., Holland, James B., Hood, Elizabeth, Hooker, David, Jarquin, Diego, Kaeppler, Shawn M., Knoll, Joseph, Kruger, Greg, Lauter, Nick, Lee, Elizabeth C., Lima, Dayane C., Lorenz, Aaron, Lynch, Jonathan P., McKay, John, Miller, Nathan D., Moose, Stephen P., Murray, Seth C., Nelson, Rebecca, Poudyal, Christina, Rocheford, Torbert, Rodriguez, Oscar, Romay, Maria Cinta, Schnable, James C., Schnable, Patrick S., Scully, Brian, Sekhon, Rajandeep, Silverstein, Kevin, Singh, Maninder, Smith, Margaret, Spalding, Edgar P., Springer, Nathan, Thelen, Kurt, Thomison, Peter, Tuinstra, Mitchell, Wallace, Jason, Walls, Ramona, Wills, David, Wisser, Randall J., Xu, Wenwei, Yeh, Cheng Ting, De Leon, Natalia, 2020

Root metaxylem and architecture phenotypes integrate to regulate water use under drought stress
Plant, Cell and Environment, Strock, Christopher F., Burridge, James D., Niemiec, Miranda D., Brown, Kathleen M., Lynch, Jonathan P., 2020

Relative utility of agronomic, phenological, and morphological traits for assessing genotype-by-environment interaction in maize inbreds
Crop Science, Falcon, Celeste M., Kaeppler, Shawn M., Spalding, Edgar P., Miller, Nathan D., Haase, Nicholas, AlKhalifah, Naser, Bohn, Martin, Buckler, Edward S., Campbell, Darwin A., Ciampitti, Ignacio, Coffey, Lisa, Edwards, Jode, Ertl, David, Flint-Garcia, Sherry, Gore, Michael A., Graham, Christopher, Hirsch, Candice N., Holland, James B., Jarquín, Diego, Knoll, Joseph, Lauter, Nick, Lawrence-Dill, Carolyn J., Lee, Elizabeth C., Lorenz, Aaron, Lynch, Jonathan P., Murray, Seth C., Nelson, Rebecca, Romay, M. Cinta, Rocheford, Torbert, Schnable, Patrick S., Scully, Brian, Smith, Margaret, Springer, Nathan, Tuinstra, Mitchell R., Walton, Renee, Weldekidan, Teclemariam, Wisser, Randall J., Xu, Wenwei, de Leon, Natalia, 2020

An analysis of soil coring strategies to estimate root depth.
Plant Phenomics, Burridge, J, Black, C, Nord, E, Postma, J, Sidhu, J, York, L, Lynch, Jonathan, 2020

An analysis of soil coring strategies to estimate root depth in maize (zea mays) and common bean (phaseolus vulgaris)
Plant Phenomics, Burridge, James D., Black, Christopher K., Nord, Eric A., Postma, Johannes A., Sidhu, Jagdeep S., York, Larry M., Lynch, Jonathan P., 2020

A case study on the efficacy of root phenotypic selection for edaphic stress tolerance in low-input agriculture
Field Crops Research, Burridge, James D., Findeis, Jill L., Jochua, Celestina N., Miguel, Magalhaes A., Mubichi-Kut, Fridah M., Quinhentos, Maria L., Xerinda, Soares A., Lynch, Jonathan P., 2019

Root cortical anatomy is associated with differential pathogenic and symbiotic fungal colonization in maize
Plant, Cell and Environment, Galindo-Castañeda, Tania, Brown, Kathleen M., Kuldau, Gretchen A., Roth, Gregory W., Wenner, Nancy G., Ray, Swayamjit, Schneider, Hannah, Lynch, Jonathan P., 2019

Genotypic variation and nitrogen stress effects on root anatomy in maize are node specific
Journal of Experimental Botany, Yang, Jennifer T., Schneider, Hannah M., Brown, Kathleen M., Lynch, Jonathan P., 2019

Shovelomics root traits assessed on the EURoot maize panel are highly heritable across environments but show low genotype-by-nitrogen interaction
Euphytica, Le Marié, Chantal A., York, Larry M., Strigens, Alexandre, Malosetti, Marcos, Camp, Karl Heinz, Giuliani, Silvia, Lynch, Jonathan P., Hund, Andreas, 2019

Erratum
Journal of Laser Applications, Hall, Benjamin, Lanba, Asheesh, Lynch, Jonathan P., 2019

Root phenotypes for improved nutrient capture
New Phytologist, Lynch, Jonathan P., 2019

Laser ablation tomography for visualization of root colonization by edaphic organisms
Journal of Experimental Botany, Strock, Christopher F., Schneider, Hannah M., Galindo-Castañeda, Tania, Hall, Benjamin T., Van Gansbeke, Bart, Mather, Diane E., Roth, Mitchell G., Chilvers, Martin I., Guo, Xiangrong, Brown, Kathleen, Lynch, Jonathan P., 2019

Seedling root architecture and its relationship with seed yield across diverse environments in Phaseolus vulgaris
Field Crops Research, Strock, Christopher F., Burridge, James, Massas, Anica S.F., Beaver, James, Beebe, Stephen, Camilo, Samuel A., Fourie, Deidré, Jochua, Celestina, Miguel, Magalhaes, Miklas, Phillip N., Mndolwa, Eninka, Nchimbi-Msolla, Susan, Polania, Jose, Porch, Timothy G., Rosas, Juan Carlos, Trapp, Jennifer J., Lynch, Jonathan P., 2019

Single and multi-trait GWAS identify genetic factors associated with production traits in common bean under abiotic stress environments
G3: Genes, Genomes, Genetics, Oladzad, Atena, Porch, Timothy, Rosas, Juan Carlos, Moghaddam, Samira Mafi, Beaver, James, Beebe, Steve E., Burridge, Jimmy, Jochua, Celestina Nhagupana, Miguel, Magalhaes Amade, Miklas, Phillip N., Ratz, Bodo, White, Jeffery W., Lynch, Jonathan, McClean, Phillip E., 2019

Parental effects and provisioning under drought and low phosphorus stress in common bean
Food and Energy Security, Lorts, Claire, Lynch, Jonathan P., Brown, Kathleen M., 2019

Genetic components of root architecture and anatomy adjustments to water-deficit stress in spring barley
PLANT CELL AND ENVIRONMENT, Oyiga, Benedict, Palczak, Janina, Wojciechowski, Tobias, Lynch, Jonathan, Naz, Ali, Leon, Jens, Ballvora, Agim, 2019

RootRobot, Shi, Xiaomeng, Choi, Daeun, Heinemann, Paul, Hanlon, Molly, Lynch, Jonathan, 2019

A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate
Nature Communications, Bhosale, Rahul, Giri, Jitender, Pandey, Bipin K., Giehl, Ricardo F.H., Hartmann, Anja, Traini, Richard, Truskina, Jekaterina, Leftley, Nicola, Hanlon, Meredith, Swarup, Kamal, Rashed, Afaf, Voß, Ute, Alonso, Jose, Stepanova, Anna, Yun, Jeonga, Ljung, Karin, Brown, Kathleen M., Lynch, Jonathan P., Dolan, Liam, Vernoux, Teva, Bishopp, Anthony, Wells, Darren, Von Wirén, Nicolaus, Bennett, Malcolm J., Swarup, Ranjan, 2018

Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate
Nature Communications, Giri, Jitender, Bhosale, Rahul, Huang, Guoqiang, Pandey, Bipin K., Parker, Helen, Zappala, Susan, Yang, Jing, Dievart, Anne, Bureau, Charlotte, Ljung, Karin, Price, Adam, Rose, Terry, Larrieu, Antoine, Mairhofer, Stefan, Sturrock, Craig J., White, Philip, Dupuy, Lionel, Hawkesford, Malcolm, Perin, Christophe, Liang, Wanqi, Peret, Benjamin, Hodgman, Charlie T., Lynch, Jonathan, Wissuwa, Matthias, Zhang, Dabing, Pridmore, Tony, Mooney, Sacha J., Guiderdoni, Emmanuel, Swarup, Ranjan, Bennett, Malcolm J., 2018

The Xerobranching Response Represses Lateral Root Formation When Roots Are Not in Contact with Water
Current Biology, Orman-Ligeza, Beata, Morris, Emily C., Parizot, Boris, Lavigne, Tristan, Babé, Aurelie, Ligeza, Aleksander, Klein, Stephanie, Sturrock, Craig, Xuan, Wei, Novák, Ondřey, Ljung, Karin, Fernandez, Maria A., Rodriguez, Pedro L., Dodd, Ian C., De Smet, Ive, Chaumont, Francois, Batoko, Henri, Périlleux, Claire, Lynch, Jonathan P., Bennett, Malcolm J., Beeckman, Tom, Draye, Xavier, 2018

Inundation of a floodplain lake woodlands system
Wetlands Ecology and Management, Fernando, Denise R., Lynch, Jonathan P., Reichman, Suzie M., Clark, Gary J., Miller, Rebecca E., Doody, Tanya M., 2018

Co-optimization of axial root phenotypes for nitrogen and phosphorus acquisition in common bean
Annals of Botany, Rangarajan, Harini, Postma, Johannes A., Lynch, Jonathan P., 2018

Maize Genomes to Fields
BMC Research Notes, Alkhalifah, Naser, Campbell, Darwin A., Falcon, Celeste M., Gardiner, Jack M., Miller, Nathan D., Romay, Maria Cinta, Walls, Ramona, Walton, Renee, Yeh, Cheng Ting, Bohn, Martin, Bubert, Jessica, Buckler, Edward S., Ciampitti, Ignacio, Flint-Garcia, Sherry, Gore, Michael A., Graham, Christopher, Hirsch, Candice, Holland, James B., Hooker, David, Kaeppler, Shawn, Knoll, Joseph, Lauter, Nick, Lee, Elizabeth C., Lorenz, Aaron, Lynch, Jonathan P., Moose, Stephen P., Murray, Seth C., Nelson, Rebecca, Rocheford, Torbert, Rodriguez, Oscar, Schnable, James C., Scully, Brian, Smith, Margaret, Springer, Nathan, Thomison, Peter, Tuinstra, Mitchell, Wisser, Randall J., Xu, Wenwei, Ertl, David, Schnable, Patrick S., De Leon, Natalia, Spalding, Edgar P., Edwards, Jode, Lawrence-Dill, Carolyn J., 2018

Reduced root cortical burden improves growth and grain yield under low phosphorus availability in maize
Plant, Cell and Environment, Galindo-Castañeda, Tania, Brown, Kathleen M., Lynch, Jonathan P., 2018

Rightsizing root phenotypes for drought resistance
Journal of Experimental Botany, Lynch, Jonathan P., 2018

Erratum
Nature Communications, Bhosale, Rahul, Giri, Jitender, Pandey, Bipin K., Giehl, Ricardo F.H., Hartmann, Anja, Traini, Richard, Truskina, Jekaterina, Leftley, Nicola, Hanlon, Meredith, Swarup, Kamal, Rashed, Afaf, Voß, Ute, Alonso, Jose, Stepanova, Anna, Yun, Jeonga, Ljung, Karin, Brown, Kathleen M., Lynch, Jonathan P., Dolan, Liam, Vernoux, Teva, Bishopp, Anthony, Wells, Darren, von Wirén, Nicolaus, Bennett, Malcolm J., Swarup, Ranjan, 2018

Erratum
Nature Communications, Giri, Jitender, Bhosale, Rahul, Huang, Guoqiang, Pandey, Bipin K., Parker, Helen, Zappala, Susan, Yang, Jing, Dievart, Anne, Bureau, Charlotte, Ljung, Karin, Price, Adam, Rose, Terry, Larrieu, Antoine, Mairhofer, Stefan, Sturrock, Craig J., White, Philip, Dupuy, Lionel, Hawkesford, Malcolm, Perin, Christophe, Liang, Wanqi, Peret, Benjamin, Hodgman, Charlie T., Lynch, Jonathan, Wissuwa, Matthias, Zhang, Dabing, Pridmore, Tony, Mooney, Sacha J., Guiderdoni, Emmanuel, Swarup, Ranjan, Bennett, Malcolm J., 2018

Buffered delivery of phosphate to Arabidopsis alters responses to low phosphate
Journal of Experimental Botany, Hanlon, Meredith T., Ray, Swayamjit, Saengwilai, Patompong, Luthe, Dawn, Lynch, Jonathan P., Brown, Kathleen M., 2018

Functional implications of root cortical senescence for soil resource capture
Plant and Soil, Schneider, Hannah M., Lynch, Jonathan P., 2018

Greater lateral root branching density in maize improves phosphorus acquisition from low phosphorus soil
Journal of Experimental Botany, Jia, Xucun, Liu, Peng, Lynch, Jonathan P., 2018

Large crown root number improves topsoil foraging and phosphorus acquisition
Plant Physiology, Sun, Baoru, Gao, Yingzhi, Lynch, Jonathan P., 2018

Reduction in root secondary growth as a strategy for phosphorus acquisition
Plant Physiology, Strock, Christopher F., De La Riva, Laurie Morrow, Lynch, Jonathan P., 2018

Ethylene modulates root cortical senescence in barley
Annals of Botany, Schneider, Hannah M., Wojciechowski, Tobias, Postma, Johannes A., Brown, Kathleen M., Lynch, Jonathan P., 2018

Ethylene mediates root cortical senescence formation in barley
Annals of Botany, Schneider, Hannah, Wojciechowski, Tobias, Postma, Johannes, Brown, Kathleen, Lynch, Jonathan, 2018

The effect of artificial selection on phenotypic plasticity in maize
Nature Communications, Gage, Joseph L., Jarquin, Diego, Romay, Cinta, Lorenz, Aaron, Buckler, Edward S., Kaeppler, Shawn, Alkhalifah, Naser, Bohn, Martin, Campbell, Darwin A., Edwards, Jode, Ertl, David, Flint-Garcia, Sherry, Gardiner, Jack, Good, Byron, Hirsch, Candice N., Holland, Jim, Hooker, David C., Knoll, Joseph, Kolkman, Judith, Kruger, Greg, Lauter, Nick, Lawrence-Dill, Carolyn J., Lee, Elizabeth, Lynch, Jonathan, Murray, Seth C., Nelson, Rebecca, Petzoldt, Jane, Rocheford, Torbert, Schnable, James, Schnable, Patrick S., Scully, Brian, Smith, Margaret, Springer, Nathan M., Srinivasan, Srikant, Walton, Renee, Weldekidan, Teclemariam, Wisser, Randall J., Xu, Wenwei, Yu, Jianming, De Leon, Natalia, 2017

Shaping 3D Root System Architecture
Current Biology, Morris, Emily C., Griffiths, Marcus, Golebiowska, Agata, Mairhofer, Stefan, Burr-Hersey, Jasmine, Goh, Tatsuaki, von Wangenheim, Daniel, Atkinson, Brian, Sturrock, Craig J., Lynch, Jonathan P., Vissenberg, Kris, Ritz, Karl, Wells, Darren M., Mooney, Sacha J., Bennett, Malcolm J., 2017

Root cortical senescence improves growth under suboptimal availability of N, P, and K
Plant Physiology, Schneider, Hannah M., Postma, Johannes A., Wojciechowski, Tobias, Kuppe, Christian, Lynch, Jonathan P., 2017

Root cortical senescence decreases root respiration, nutrient content and radial water and nutrient transport in barley
Plant, Cell and Environment, Schneider, Hannah M., Wojciechowski, Tobias, Postma, Johannes A., Brown, Kathleen M., Lücke, Andreas, Zeisler, Viktoria, Schreiber, Lukas, Lynch, Jonathan P., 2017

OpenSimRoot
New Phytologist, Postma, Johannes A., Kuppe, Christian, Owen, Markus R., Mellor, Nathan, Griffiths, Marcus, Bennett, Malcolm J., Lynch, Jonathan P., Watt, Michelle, 2017

Morphological plant modeling: Unleashing geometric and topological potential within the plant sciences
Frontiers in Plant Science, Bucksch, Alexander, Atta-Boateng, Acheampong, Azihou, Akomian F., Battogtokh, Dorjsuren, Baumgartner, Aly, Binder, Brad M., Braybrook, Siobhan A., Chang, Cynthia, Coneva, Viktoirya, DeWitt, Thomas J., Fletcher, Alexander G., Gehan, Malia A., Diaz-Martinez, Diego Hernan, Hong, Lilan, Iyer-Pascuzzi, Anjali S., Klein, Laura L., Leiboff, Samuel, Li, Mao, Lynch, Jonathan P., Maizel, Alexis, Maloof, Julin N., Cody Markelz, R. J., Martinez, Ciera C., Miller, Laura A., Mio, Washington, Palubicki, Wojtek, Poorter, Hendrik, Pradal, Christophe, Price, Charles A., Puttonen, Eetu, Reese, John B., Rellán-Álvarez, Rubén, Spalding, Edgar P., Sparks, Erin E., Topp, Christopher N., Williams, Joseph H., Chitwood, Daniel H., 2017

Crops in silico
Frontiers in Plant Science, Marshall-Colon, Amy, Long, Stephen P., Allen, Douglas K., Allen, Gabrielle, Beard, Daniel A., Benes, Bedrich, Von Caemmerer, Susanne, Christensen, A. J., Cox, Donna J., Hart, John C., Hirst, Peter M., Kannan, Kavya, Katz, Daniel S., Lynch, Jonathan P., Millar, Andrew J., Panneerselvam, Balaji, Price, Nathan D., Prusinkiewicz, Przemyslaw, Raila, David, Shekar, Rachel G., Shrivastava, Stuti, Shukla, Diwakar, Srinivasan, Venkatraman, Stitt, Mark, Turk, Matthew J., Voit, Eberhard O., Wang, Yu, Yin, Xinyou, Zhu, Xin Guang, 2017

Genome-wide association mapping and agronomic impact of cowpea root architecture
Theoretical And Applied Genetics, Burridge, James D., Schneider, Hannah M., Huynh, Bao Lam, Roberts, Philip A., Bucksch, Alexander, Lynch, Jonathan P., 2017

Functional implications of root cortical senescence for soil resource capture
Plant Soil, Schneider, Hannah, Lynch, Jonathan, 2017

NPK deficiency modulates oxidative stress in plants, Zhang, Zhiyong, Lynch, Jonathan P., Zhang, Baohong, Wang, Qinglian, 2017

Genetic Variability in Phosphorus Responses of Rice Root Phenotypes
Rice, Vejchasarn, Phanchita, Lynch, Jonathan P., Brown, Kathleen M., 2016

Temperature and light drive manganese accumulation and stress in crops across three major plant families
Environmental and Experimental Botany, Fernando, Denise R., Moroni, Sergio J., Scott, Brendan J., Conyers, Mark K., Lynch, Jonathan P., Marshall, Alan T., 2016

Impact of axial root growth angles on nitrogen acquisition in maize depends on environmental conditions
Annals of Botany, Dathe, A., Postma, J. A., Postma-Blaauw, M. B., Lynch, J. P., 2016

Reduced crown root number improves water acquisition under water deficit stress in maize (Zea mays L.)
Journal of Experimental Botany, Gao, Yingzhi, Lynch, Jonathan P., 2016

Legume shovelomics
Field Crops Research, Burridge, James, Jochua, Celestina N., Bucksch, Alexander, Lynch, Jonathan P., 2016

Plants in silico
Plant, Cell and Environment, Zhu, Xin Guang, Lynch, Jonathan P., Lebauer, David S., Millar, Andrew J., Stitt, Mark, Long, Stephen P., 2016

Digital imaging of root traits (DIRT)
Plant Methods, Das, Abhiram, Schneider, Hannah, Burridge, James, Ascanio, Ana Karine Martinez, Wojciechowski, Tobias, Topp, Christopher N., Lynch, Jonathan P., Weitz, Joshua S., Bucksch, Alexander, 2015

Towards modeling the function of root traits for enhancing water acquisition by crops, Postma, Jouke A., Jaramillo, Raul E., Lynch, Jonathan P., 2015

Root phenes that reduce the metabolic costs of soil exploration
Plant, Cell and Environment, Lynch, Jonathan P., 2015

Manganese phytotoxicity
Annals of Botany, Fernando, Denise R., Lynch, Jonathan P., 2015

The hidden half of crop yields
Nature Plants, Bishopp, Anthony, Lynch, Jonathan Paul, 2015

Reduced lateral root branching density improves drought tolerance in maize
Plant Physiology, Zhan, Ai, Schneider, Hannah, Lynch, Jonathan P., 2015

Root anatomical phenes predict root penetration ability and biomechanical properties in maize (Zea Mays)
Journal of Experimental Botany, Chimungu, Joseph G., Loades, Kenneth W., Lynch, Jonathan P., 2015

Phene synergism between root hair length and basal root growth angle for phosphorus Acquisition
Plant Physiology, Miguel, Magalhaes Amade, Postma, Johannes Auke, Lynch, Jonathan Paul, 2015

Evolution of US maize (Zea mays L.) root architectural and anatomical phenes over the past 100 years corresponds to increased tolerance of nitrogen stress
Journal of Experimental Botany, York, Larry M., Galindo-Castañeda, Tania, Schussler, Jeffrey R., Lynch, Jonathan P., 2015

Reduced frequency of lateral root branching improves N capture from low-N soils in maize
Journal of Experimental Botany, Zhan, Ai, Lynch, Jonathan P., 2015

Opportunities and challenges in the subsoil
Journal of Experimental Botany, Lynch, Jonathan P., Wojciechowski, Tobias, 2015

Next generation shovelomics
Plant and Soil, Colombi, Tino, Kirchgessner, Norbert, Le Marié, Chantal Andrée, York, Larry Matthew, Lynch, Jonathan P., Hund, Andreas, 2015

Response to elevated CO2 in the temperate C3 grass Festuca arundinaceae across a wide range of soils
Frontiers in Plant Science, Nord, Eric A., Jaramillo, Raúl E., Lynch, Jonathan P., 2015

Utility of root cortical aerenchyma under water limited conditions in tropical maize (Zea mays L.)
Field Crops Research, Chimungu, Joseph G., Maliro, Moses F.A., Nalivata, Patson C., Kanyama-Phiri, George, Brown, Kathleen M., Lynch, Jonathan P., 2015

QTL mapping and phenotypic variation of root anatomical traits in maize (Zea mays L.)
Theoretical And Applied Genetics, Burton, Amy L., Johnson, James, Foerster, Jillian, Hanlon, Meredith T., Kaeppler, Shawn M., Lynch, Jonathan P., Brown, Kathleen M., 2015

Modeling resource interactions under multiple edaphic stresses, Dathe, Annette, Postma, Johannes A., Lynch, Jonathan P., 2015

Large root cortical cell size improves drought tolerance in maize
Plant Physiology, Chimungu, Joseph G., Brown, Kathleen M., Lynch, Jonathan P., 2014

Root foraging elicits niche complementarity-dependent yield advantage in the ancient 'three sisters' (maize/bean/squash) polyculture
Annals of Botany, Zhang, Chaochun, Postma, Johannes A., York, Larry M., Lynch, Jonathan P., 2014

Reduced root cortical cell file number improves drought tolerance in maize
Plant Physiology, Chimungu, Joseph G., Brown, Kathleen M., Lynch, Jonathan P., 2014

The optimal lateral root branching density for maize depends on nitrogen and phosphorus availability
Plant Physiology, Postma, Johannes Auke, Dathe, Annette, Lynch, Jonathan Paul, 2014

Low crown root number enhances nitrogen acquisition from low-nitrogen soils in maize
Plant Physiology, Saengwilai, Patompong, Tian, Xiaoli, Lynch, Jonathan Paul, 2014

Image-based high-throughput field phenotyping of crop roots
Plant Physiology, Bucksch, Alexander, Burridge, James, York, Larry M., Das, Abhiram, Nord, Eric, Weitz, Joshua S., Lynch, Jonathan P., 2014

Root traits for improving nitrogen acquisition efficiency, Chimungu, Joseph G., Lynch, Jonathan P., 2014

Root cortical aerenchyma inhibits radial nutrient transport in maize (Zea mays)
Annals of Botany, Hu, Bo, Henry, Amelia, Brown, Kathleen M., Lynch, Jonathan P., 2014

QTL mapping and phenotypic variation for root architectural traits in maize (Zea mays L.)
Theoretical And Applied Genetics, Burton, Amy L., Johnson, James M., Foerster, Jillian M., Hirsch, Candice N., Buell, C. R., Hanlon, Meredith T., Kaeppler, Shawn M., Brown, Kathleen M., Lynch, Jonathan P., 2014

Root cortical aerenchyma enhances nitrogen acquisition from low-nitrogen soils in maize
Plant Physiology, Saengwilai, Patompong, Nord, Eric A., Chimungu, Joseph G., Brown, Kathleen M., Lynch, Jonathan Paul, 2014

Root anatomical phenes associated with water acquisition from drying soil
Journal of Experimental Botany, Lynch, Jonathan P., Chimungu, Joseph G., Brown, Kathleen M., 2014

Basal root whorl number
Annals of Botany, Miguel, M. A., Widrig, A., Vieira, R. F., Brown, K. M., Lynch, J. P., 2013

Integration of root phenes for soil resource acquisition
Frontiers in Plant Science, York, Larry M., Nord, Eric A., Lynch, Jonathan P., 2013

Root cortical burden influences drought tolerance in maize
Annals of Botany, Jaramillo, Raúl E., Nord, Eric A., Chimungu, Joseph G., Brown, Kathleen M., Lynch, Jonathan P., 2013

Steep, cheap and deep
Annals of Botany, Lynch, Jonathan P., 2013

Spatial distribution and phenotypic variation in root cortical aerenchyma of maize (Zea mays L.)
Plant and Soil, Burton, Amy L., Lynch, Jonathan P., Brown, Kathleen M., 2013

Land use effects on erosion and carbon storage of the Río Chimbo watershed, Ecuador
Plant and Soil, Henry, A., Mabit, L., Jaramillo, R. E., Cartagena, Y., Lynch, J. P., 2013

Phenotypic diversity of root anatomical and architectural traits in Zea species
Crop Science, Burton, Amy L., Brown, Kathleen M., Lynch, Jonathan P., 2013

Maize root growth angles become steeper under low N conditions
Field Crops Research, Trachsel, S., Kaeppler, S. M., Brown, K. M., Lynch, J. P., 2013

Nutrient Uptake and Root System Architecture Modeling: Past and Prospects for the Future
PLANT ROOTS: THE HIDDEN HALF, 4TH EDITION, Silberbush, Moshe, Eshel, Amram, Lynch, Jonathan, 2013

RootScan
Plant and Soil, Burton, Amy L., Williams, Michael, Lynch, Jonathan P., Brown, Kathleen M., 2012

Responses to low phosphorus in high and low foliar anthocyanin coleus (Solenostemon scutellarioides) and maize (Zea mays)
Australian journal of scientific research. Ser. B: Biological sciences, Henry, Amelia, Chopra, Surinder, Clark, David G., Lynch, Jonathan P., 2012

Analyzing lateral root development
Plant Cell, de Smet, Ive, White, Philip J., Glyn Bengough, A., Dupuy, Lionel, Parizot, Boris, Casimiro, Ilda, Heidstra, Renze, Laskowski, Marta, Lepetit, Marc, Hochholdinger, Frank, Draye, Xavier, Zhang, Hanma, Broadley, Martin R., Péret, Benjamin, Hammond, John P., Fukaki, Hidehiro, Mooney, Sacha, Lynch, Jonathan P., Nacry, Phillipe, Schurr, Ulrich, Laplaze, Laurent, Benfey, Philip, Beeckman, Tom, Bennetta, Malcolm, 2012

New roots for agriculture
Philosophical Transactions of the Royal Society B: Biological Sciences, Lynch, Jonathan P., Brown, Kathleen M., 2012

Effect of Internal and External Factors on Root Growth and Development, Lynch, Jonathan, Marschner, Petra, Rengel, Zed, 2012

Strategies and agronomic interventions to improve the phosphorus-use efficiency of farming systems
Plant and Soil, Simpson, Richard J., Oberson, Astrid, Culvenor, Richard A., Ryan, Megan H., Veneklaas, Erik J., Lambers, Hans, Lynch, Jonathan P., Ryan, Peter R., Delhaize, Emmanuel, Smith, F. Andrew, Smith, Sally E., Harvey, Paul R., Richardson, Alan E., 2011

Plant and microbial strategies to improve the phosphorus efficiency of agriculture
Plant and Soil, Richardson, Alan E., Lynch, Jonathan P., Ryan, Peter R., Delhaize, Emmanuel, Smith, F. Andrew, Smith, Sally E., Harvey, Paul R., Ryan, Megan H., Veneklaas, Erik J., Lambers, Hans, Oberson, Astrid, Culvenor, Richard A., Simpson, Richard J., 2011

Phenotypic variability and modelling of root structure of wild Lupinus angustifolius genotypes
Plant and Soil, Chen, Ying Long, Dunbabin, Vanessa M., Postma, Johannes A., Diggle, Art J., Palta, Jairo A., Lynch, Jonathan P., Siddique, Kadambot H.M., Rengel, Zed, 2011

Optimizing reproductive phenology in a two-resource world
Annals of Botany, Nord, Eric A., Shea, Katriona, Lynch, Jonathan P., 2011

Genotypic variation for root traits of maize (Zea mays L.) from the Purhepecha Plateau under contrasting phosphorus availability
Field Crops Research, Bayuelo-Jiménez, Jeannette S., Gallardo-Valdéz, Marín, Pérez-Decelis, Verónica A., Magdaleno-Armas, Lourdes, Ochoa, Iván, Lynch, Jonathan P., 2011

Shovelomics
Plant and Soil, Trachsel, Samuel, Kaeppler, Shawn M., Brown, Kathleen M., Lynch, Jonathan P., 2011